ecandeloro commited on
Commit
d09ab49
·
verified ·
1 Parent(s): d0e5ce7

Create README.md

Browse files
Files changed (1) hide show
  1. README.md +61 -0
README.md ADDED
@@ -0,0 +1,61 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ license: cc-by-nc-sa-4.0
3
+ library_name: pytorch
4
+ tags:
5
+ - histology
6
+ - neuroscience
7
+ - hippocampus
8
+ - bigbrain
9
+ - cell-segmentation
10
+ - density-estimation
11
+ - non-commercial
12
+ ---
13
+
14
+ # CALHippo Model Weights
15
+
16
+ This repository contains released model artifacts for the CALHippo framework,
17
+ including segmentation, density-estimation, and classification components used
18
+ by the public reproducibility path.
19
+
20
+ ## License and Terms of Use
21
+
22
+ The CALHippo model weights in this repository are released under
23
+ Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International
24
+ (CC BY-NC-SA 4.0).
25
+
26
+ These weights were trained and/or fine-tuned using BigBrain-derived
27
+ histological data. They are intended for non-commercial academic research use
28
+ only. Redistribution, adaptation, and sharing of derived versions must comply
29
+ with CC BY-NC-SA 4.0 and with any applicable upstream dataset, model, and
30
+ software licenses.
31
+
32
+ This repository does not redistribute UNI2-h weights. UNI2-h is a gated upstream
33
+ model distributed by MahmoodLab under its own access terms and license. Users
34
+ who want to run the UNI2-h classification path must request access from the
35
+ upstream provider and authenticate locally.
36
+
37
+ ## Included Artifacts
38
+
39
+ ```text
40
+ density_estimation/
41
+ short_unet/
42
+ final_density_model.pth
43
+ *.yaml
44
+
45
+ segmentation/
46
+ cellpose/
47
+ finetune_v4_astrocytes_big_brain
48
+ hovernet/
49
+ net_epoch=20.tar
50
+ instanseg/
51
+ instanseg.pt
52
+ stardist/
53
+ config.json
54
+ thresholds.json
55
+ weights_best.h5
56
+
57
+ classification/
58
+ ml_classifier/
59
+ model.joblib
60
+ metadata.json
61
+ metrics.json