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README.md
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---
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license: cc-by-nc-sa-4.0
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library_name: pytorch
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tags:
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- histology
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- neuroscience
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- hippocampus
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- bigbrain
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- cell-segmentation
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- density-estimation
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- non-commercial
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---
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# CALHippo Model Weights
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This repository contains released model artifacts for the CALHippo framework,
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including segmentation, density-estimation, and classification components used
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by the public reproducibility path.
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## License and Terms of Use
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The CALHippo model weights in this repository are released under
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Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International
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(CC BY-NC-SA 4.0).
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These weights were trained and/or fine-tuned using BigBrain-derived
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histological data. They are intended for non-commercial academic research use
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only. Redistribution, adaptation, and sharing of derived versions must comply
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with CC BY-NC-SA 4.0 and with any applicable upstream dataset, model, and
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software licenses.
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This repository does not redistribute UNI2-h weights. UNI2-h is a gated upstream
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model distributed by MahmoodLab under its own access terms and license. Users
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who want to run the UNI2-h classification path must request access from the
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upstream provider and authenticate locally.
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## Included Artifacts
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```text
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density_estimation/
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short_unet/
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final_density_model.pth
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*.yaml
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segmentation/
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cellpose/
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finetune_v4_astrocytes_big_brain
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hovernet/
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net_epoch=20.tar
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instanseg/
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instanseg.pt
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stardist/
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config.json
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thresholds.json
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weights_best.h5
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classification/
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ml_classifier/
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model.joblib
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metadata.json
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metrics.json
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