Update README.md
Browse files
README.md
CHANGED
|
@@ -63,4 +63,40 @@ classification/
|
|
| 63 |
model.joblib
|
| 64 |
metadata.json
|
| 65 |
metrics.json
|
| 66 |
-
```
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 63 |
model.joblib
|
| 64 |
metadata.json
|
| 65 |
metrics.json
|
| 66 |
+
```
|
| 67 |
+
## Not Included
|
| 68 |
+
`classification/feature_encoder/uni2h/`
|
| 69 |
+
|
| 70 |
+
UNI2-h is not redistributed. The CALHippo setup script downloads or loads UNI2-h
|
| 71 |
+
only after the user has obtained upstream access and authenticated with Hugging
|
| 72 |
+
Face.
|
| 73 |
+
|
| 74 |
+
## Attribution
|
| 75 |
+
|
| 76 |
+
If you use these model weights, please cite the CALHippo framework and the
|
| 77 |
+
upstream resources used by the pipeline, including BigBrain and the relevant
|
| 78 |
+
model families:
|
| 79 |
+
|
| 80 |
+
BigBrain
|
| 81 |
+
Selected 1 micron BigBrain histological sections
|
| 82 |
+
Cellpose / Cellpose-SAM
|
| 83 |
+
HoVer-Net
|
| 84 |
+
InstanSeg
|
| 85 |
+
StarDist
|
| 86 |
+
UNI / UNI2-h, when using the UNI2-h classification path
|
| 87 |
+
|
| 88 |
+
Please also retain attribution and license notices for upstream software and
|
| 89 |
+
model components used by the CALHippo framework.
|
| 90 |
+
|
| 91 |
+
## Intended Use
|
| 92 |
+
|
| 93 |
+
These weights are intended for non-commercial academic research on histological
|
| 94 |
+
image analysis, hippocampal cellular annotation, segmentation, classification,
|
| 95 |
+
density estimation, and mesoscale reconstruction.
|
| 96 |
+
|
| 97 |
+
They are not intended for clinical diagnosis, medical decision-making, or
|
| 98 |
+
commercial deployment.
|
| 99 |
+
|
| 100 |
+
## Loading with the CALHippo framework
|
| 101 |
+
|
| 102 |
+
The recommended way to obtain these artifacts is through the [CALHippo Framework](https://github.com/AImageLab-zip/CALHippo-Framework)
|